PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G024300.6.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 824aa    MW: 91876.5 Da    PI: 8.0672
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G024300.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.64.6e-131091841499
                         T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         + +v+p  f +++ g+      ++le ++g+ ++v +  + k ++++l++GW+ Fv+an+++e+  ++F++ g+s+f   v++f++
  Brast01G024300.6.p 109 HSVVIPEYFGRDILGS------IKLEAPNGNIYDVGV--TVKMNTTLLQSGWRAFVDANQIEENYCLMFRYRGTSQF--EVTIFDS 184
                         6689999999999654......9**************..99999***************************999999..9999986 PP

2B346.65.9e-157298201199
                         HHTT-EE--HHH.HTT.....---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
                  B3  11 lksgrlvlpkkfaeeh.....ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                         ++s+  ++++  ae++     gg+ ++++ l l    ++r+W+ +l  r++ +r+ l +GW  F+++n+L+egD ++F++  + ++ ++vv
  Brast01G024300.6.p 729 FSSR--YISRYLAEKYgkglpGGEMRRTISLFLLReGKSRTWSCQL--RRTCDRTRLDNGWPLFARDNHLQEGDLCLFEVLTNeEQLKMVV 815
                         4444..788888888899999777777777777773677*******..*******************************77666******* PP

                         EEE-S CS
                  B3  95 kvfrk 99 
                          ++r+
  Brast01G024300.6.p 816 YIIRR 820
                         **997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.13896185IPR003340B3 DNA binding domain
CDDcd100172.77E-1298183No hitNo description
SuperFamilySSF1019368.04E-1498185IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.003599185IPR003340B3 DNA binding domain
PfamPF023621.6E-10109184IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.5E-13110186IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-11245336IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.24E-10247351IPR015300DNA-binding pseudobarrel domain
CDDcd100172.94E-8250350No hitNo description
PROSITE profilePS508636.879252353IPR003340B3 DNA binding domain
SMARTSM010190.058252355IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-12445548IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-13445544IPR015300DNA-binding pseudobarrel domain
CDDcd100171.74E-11450549No hitNo description
PROSITE profilePS508637.613451554IPR003340B3 DNA binding domain
PfamPF023621.1E-7452537IPR003340B3 DNA binding domain
SMARTSM010190.0024452554IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-12703823IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.1E-14704822IPR015300DNA-binding pseudobarrel domain
CDDcd100174.25E-11707819No hitNo description
SMARTSM010193.0E-6720821IPR003340B3 DNA binding domain
PfamPF023624.6E-13728820IPR003340B3 DNA binding domain
PROSITE profilePS5086311.476758821IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 824 aa     Download sequence    Send to blast
MRRCEGDQGA SLAPRQEGGR SAGEDGDSPC RGQKRTEVPA AVGESRAPAH AAAGILLCSC  60
RLQHRPIRVL HRSFKLLTLL KDVSKMSNPC KGCQSKIRFI RHMNGNYMHS VVIPEYFGRD  120
ILGSIKLEAP NGNIYDVGVT VKMNTTLLQS GWRAFVDANQ IEENYCLMFR YRGTSQFEVT  180
IFDSNGEGSD STAYSSKELA ENNPSLDDSM ESVDLQVLSN YYVLSGLCDL TEEQLTKLHA  240
LVGKIKPEIP VLVVLMKKSN VNQNCTLIIR KDYAREYFPP KNTTIILQLP GKSNHWNCKF  300
YIRPSGMSDA GRCNLCMANF VRDNHVRKGD IFLLQPITKV KGPIFTVTVH LLHKASIDGA  360
TDQSSAGEGS DSDGCPKESS CCYRKSAQWS ATAYSSDELS ESNPSLDDSV ESDDLQMLSN  420
GYVLSVQCNL TEAQLSKLHA LVGKIKPEIP VFVVLMKKSN VKKYTLIICK DYARKYFPRE  480
NTKIILQLPK KGKHWNCKLY IKPSGRSDAG RWNLSMGNFV RDNHVREGDI FLLQPVANII  540
GRIFTVTVHL LHKASIDSSP ERRTDIGLNH RCASTKMAST ARVKEEPTTD GEETSSSGNG  600
EHGSSDNSEE DSEPRSLINH GCASTKMGST ARVKEEPTID GTAARVKEEP TIDAEEISSS  660
GHGEHGFSDN FEEASEPRFL PLDTSCLTQA QEKKMMEKVE AIGSELPIYF KVINKSAACF  720
YKPTPNLVFS SRYISRYLAE KYGKGLPGGE MRRTISLFLL REGKSRTWSC QLRRTCDRTR  780
LDNGWPLFAR DNHLQEGDLC LFEVLTNEEQ LKMVVYIIRR DKC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014754675.10.0PREDICTED: B3 domain-containing protein Os03g0620400-like isoform X2
TrEMBLA0A0Q3GK700.0A0A0Q3GK70_BRADI; Uncharacterized protein
TrEMBLA0A0Q3GK820.0A0A0Q3GK82_BRADI; Uncharacterized protein
STRINGBRADI2G60554.11e-175(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-14B3 family protein